Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs1936065 | chr1:119132402 | C/T | 3.18E-7 | 489 | 15.98 | 15.93 | 15.17 | KM Plot |
| THCA | rs1951843 | chr14:36211153 | G/A | 5.07E-6 | 490 | 15.97 | 16.07 | 8.33 | KM Plot |
| THCA | rs1951844 | chr14:36211074 | C/G | 5.08E-6 | 490 | 15.97 | 16.07 | 8.33 | KM Plot |
| THCA | rs1952313 | chr1:166980583 | G/A | 8.65E-8 | 477 | 15.75 | 16.1 | 17.47 | KM Plot |
| THCA | rs1962410 | chr15:41333816 | T/C | 0.000136 | 490 | 15.17 | 16.3 | 16.83 | KM Plot |
| THCA | rs1965139 | chr15:41536352 | C/T | 0.000116 | 483 | 15.15 | 15.97 | 17.62 | KM Plot |
| THCA | rs1965140 | chr15:41536265 | A/G | 0.000233 | 487 | 15.17 | 15.93 | 17 | KM Plot |
| THCA | rs1968389 | chr16:84510820 | G/T | 6.09E-5 | 482 | 15.83 | 15.65 | 17.77 | KM Plot |
| THCA | rs1973312 | chr11:6352121 | G/A | 6.67E-5 | 484 | 11.67 | 17.83 | 15.3 | KM Plot |
| THCA | rs1978092 | chr16:20886935 | A/C | 9.13E-5 | 490 | 16.33 | 14.75 | 17.65 | KM Plot |
| THCA | rs1983775 | chr10:81663575 | G/A | 0 | 482 | 15.67 | 17.23 | 5.92 | KM Plot |
| THCA | rs1983776 | chr10:81663695 | C/T | 0 | 482 | 15.67 | 17.23 | 5.92 | KM Plot |
| THCA | rs1985998 | chr4:39456708 | G/A | 4.44E-15 | 489 | 15.9 | 16.38 | 6.1 | KM Plot |
| THCA | rs199506316 | chr22:25484074 | CTTTCTTTT/C | 3.41E-7 | 489 | 15.77 | 16.63 | 7.87 | KM Plot |
| THCA | rs1995612 | chr18:59974497 | T/G | 0.000282 | 490 | 12.85 | 16.67 | 15.47 | KM Plot |